Edge^2 environment

Environment, Drugs and Gene Expression

Treatment and Gene Clustering


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Query Parameters Instructions?
Cluster By: Your Query Options:
Clustering Method: Hierarchical
K-Means

Create a login in order
to use the save queries feature!

Data Options: Not Condensed
Condensed
Number of Clusters:
Cluster Treatments?: Cluster Treatments
Custom Order/Name Treatments (No Clustering)
NOTE: Allows you to select whether the
treatments should be clustered
or manually ordered and/or named..
Ordering Of Selections
Ordering/Naming Options: Default Ordering (by Array ID) w/o Custom Names
Custom Order/Name
NOTE: This option gives you the ability to order
your Chemical(s)/Condition(s) selections on a subsequent
screen. The number of groups entered will allow you to allot
the treatments to separate groups, thereby segregating them
based on your own discretion.
Number of Ordered Groups:
Selection Options
Selection Options: Chemical(s)/Condition(s) Group
Treatment Groups
Both Options
Chemical(s)/Condition(s)
Chemical Treatments
Conditions/Vehicle Treatments
Physiologic States
Rats
Mutant Mice
Transgenic Mice
Cell Lines
Mixtures
Tumors
Treatment Groups (Click on a group to pick chemicals listed under it)


Heat Map Options
Heat Map Color Scheme: Red/Green
Yellow/Blue
Heat Map Image Output: SVG
PNG
JPG
NOTE: PNG format will be automatically selected for large queries!
Threshold Values:
Minimum Induction: to maximum of NOTE: Value must be positive.
Minimum Repression: to minimum of NOTE: Value must be negative.